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Tables of Contents for Techniques in Molecular Systematics and Evolution
Chapter/Section Title
Page #
Page Count
vii
General Introduction
ix
I Analytical Methods
Introduction to Part I
3
1
Phylogenetic Analysis: The Basic Method
4
27
Parsimony Analysis
31
24
Optimization Alignment: Down, Up, Error, and Improvements
55
15
Techniques for Analyzing Large Data Sets
70
10
Measures of Support
80
22
Partitioning of Multiple Data Sets in Phylogenetic Analysis
102
18
Complex Model Organism Genome Databases
120
12
Comparative Phylogenomics: A Strategy for High-throughput Large-scale Sub-genomic Sequencing Projects for Phylogenetic Analysis
132
14
Comparative Methods
146
16
Analyzing Data at the Population Level
162
14
II Laboratory Methods
Introduction to Part II
175
1
Obtaining, Storing and Archiving Specimens and Tissue Samples for Use in Molecular Studies
176
73
DNA Isolation Procedures
249
39
Late Pleistocene DNA Extraction and Analysis
288
14
PCR Methods and Approaches
302
26
High-Throughput DNA Sequencing for Systematics
328
23
A Practical Guide for Microsatellite Analysis
351
14
Determining the Spatial and Temporal Patterns of Developmental Gene Expression in Vertebrates and Invertebrates Using in situ Hybridization Techniques
365
30
Guide to Solutions
395
2
Guide to protocols
397
2
Troubleshooting Guide
399
2
Index
401