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Tables of Contents for Manual of Clinical Microbiology
Chapter/Section Title
Page #
Page Count
Editorial Board
xi
2
Contributors
xiii
8
Preface
xxi
SECTION I GENERAL ISSUES IN CLINICAL MICROBIOLOGY
1
104
PATRICK R. MURRAY
BETTY ANN FORBES
1 Introduction to the Seventh Edition of the Manual of Clinical Microbiology
3
1
PATRICK R. MURRAY
2 Laboratory Management
4
19
DAVID L. SEWELL
JAMES D. MACLOWRY
3 Commensal and Pathogenic Microorganisms of Humans
23
10
SUSAN E. SHARP
4 Specimen Collection, Transport, and Storage
33
31
J. MICHAEL MILLER
HARVEY T. HOLMES
5 Specimen Processing
64
41
BARBARA S. REISNER
GAIL L. WOODS
RICHARD B. THOMSON, JR.
DAVISE H. LARONE
LYNNE S. GARCIA
ROBYN Y. SHIMIZU
SECTION II THE CLINICAL MICROBIOLOGY LABORATORY IN INFECTION CONTROL AND PREVENTION
105
86
MICHAEL A. PFALLER
RICHARD P. WENZEL
6 Infection Control Epidemiology and Clinical Microbiology
107
9
JOHN E. McGOWAN, JR.
BEVERLY G. METCHOCK
7 Laboratory Procedures for the Epidemiologic Analysis of Microorganisms
116
22
ROBERT D. ARBEIT
8 Decontamination, Disinfection, and Sterilization
138
27
ANDREAS F. WIDMER
RENO FREI
9 Prevention and Control of Laboratory-Acquired Infections
165
9
ANDREAS VOSS
10 Investigation of Foodborne and Waterborne Disease Outbreaks
174
17
BALA SWAMINATHAN
JAMES BEEBE
JOHN BESSER
SECTION III DIAGNOSTIC TECHNOLOGIES IN CLINICAL MICROBIOLOGY
191
55
FRED C. TENOVER
GARY V. DOERN
11 Manual and Automated Systems for Microbial Identification
193
9
J. MICHAEL MILLER
CAROLINE M. O'HARA
12 Immunoassays for the Diagnosis of Infectious Diseases
202
13
JAMES B. MAHONY
MAX A. CHERNESKY
13 Molecular Detection and Identification of Microorganisms
215
31
YI-WEI TANG
DAVID H. PERSING
SECTION IV BACTERIOLOGY
246
586
ELLEN JO BARON
PATRICK R. MURRAY
GARY V. DOERN
MARY JANE FERRARO
PETER H. GILLIGAN
J. MICHAEL JANDA
ALEXANDER VON GRAEVENITZ
14 Taxonomy and Classification of Bacteria
249
13
PATRICK A. D. GRIMONT
GRAM-POSITIVE COCCI
15 Algorithm for Identification of Aerobic Gram-Positive Cocci
262
2
KATHRYN L. RUOFF
16 Staphylococcus and Micrococcus
264
19
WESLEY E. KLOOS
TAMMY L. BANNERMAN
17 Streptococcus
283
14
KATHRYN L. RUOFF
R. A. WHILEY
D. BEIGHTON
18 Enterococcus
297
9
RICHARD R. FACKLAM
DANIEL F. SAHM
LUCIA MARTINS TEIXEIRA
19 Leuconostoc, Pediococcus, Stomatococcus, and Miscellaneous Gram-Positive Cocci That Grow Aerobically
306
10
KATHRYN L. RUOFF
GRAM-POSITIVE RODS
20 Algorithm for Identification of Aerobic Gram-Positive Rods
316
3
GUIDO FUNKE
21 Coryneform Gram-Positive Rods
319
27
GUIDO FUNKE
KATHRYN A. BERNARD
22 Listeria, Erysipelothrix, and Kurthia
346
11
JACQUES BILLE
JOCELYNE ROCOURT
BALA SWAMINATHAN
23 Bacillus and Recently Derived Genera
357
13
NIALL A. LOGAN
PETER C. B. TURNBULL
24 Nocardia, Rhodococcus, Gordona, Actinomadura, Streptomyces, and Other Actinomycetes of Medical Importance
370
29
JUNE M. BROWN
MICHAEL M. McNEIL
EDWARD P. DESMOND
25 Mycobacterium
399
39
BEVERLY G. METCHOCK
FREDERICK S. NOLTE
RICHARD J. WALLACE, JR.
GRAM-NEGATIVE BACTERIA
26 Algorithms for Identification of Aerobic Gram-Negative Bacteria
438
4
PAUL C. SCHRECKENBERGER
J. MICHAEL JANDA
JANE D. WONG
ELLEN JO BARON
27 Enterobacteriaceae: Introduction and Identification
442
17
J. J. FARMER III
28 Escherichia, Shigella, and Salmonella
459
16
CHERYL A. BOPP
FRANCES W. BRENNER
JOY G. WELLS
NANCY A. STROCKBINE
29 Klebsiella, Enterobacter, Citrobacter, and Serratia
475
8
SHARON ABBOTT
30 Yersinia and Other Enterobacteriaceae
483
14
STOJANKA ALEKSIC
JOCHEN BOCKEMUHL
31 Vibrio
497
10
DAVID L. TISON
32 Aeromonas and Plesiomonas
507
10
MARTIN ALTWEGG
33 Pseudomonas
517
9
DEANNA L. KISKA
PETER H. GILLIGAN
34 Burkholderia, Stenotrophomonas, Ralstonia, Brevundimonas, Comamonas, and Acidovorax
526
13
PETER H. GILLIGAN
SUSAN WHITTIER
35 Acinetobacter, Alcaligenes, Moraxella, Methylobacterium, and Other Nonfermentative Gram-Negative Rods
539
22
PAUL C. SCHRECKENBERGER
ALEXANDER VON GRAEVENITZ
36 Actinobacillus, Capnocytophaga, Eikenella, Kingella, and Other Fastidious or Rarely Encountered Gram-Negative Rods
561
11
REINIER MUTTERS
37 Legionella
572
14
WASHINGTON C. WINN, JR.
38 Neisseria and Branhamella
586
18
JOAN S. KNAPP
EMILY H. KOUMANS
39 Haemophilus
604
10
JOSEPH M. CAMPOS
40 Bordetella
614
11
JORG E. HOPPE
41 Brucella
625
7
DANIEL S. SHAPIRO
JANE D. WONG
42 Pasteurella
632
6
BARRY HOLMES
M. JOHN PICKETT
DANNIE G. HOLLIS
43 Bartonella and Afipia
638
9
DAVID F. WELCH
LEONARD N. SLATER
44 Francisella
647
5
JANE D. WONG
DANIEL S. SHAPIRO
ANAEROBIC BACTERIA
45 Algorithm for Identification of Anaerobic Bacteria
652
2
ELLEN JO BARON
DIANE M. CITRON
46 Clostridium
654
18
STEPHEN D. ALLEN
CHRISTOPHER L. EMERY
JEAN A. SIDERS
47 Peptostreptococcus, Propionibacterium, Lactobacillus, Actinomyces, and Other Non-Spore-Forming Anaerobic Gram-Positive Bacteria
672
18
ARNE C. RODLOFF
SHARON L. HILLIER
BERNARD J. MONCLA
48 Bacteroides, Porphyromonas, Prevotella, Fusobacterium, and Other Anaerobic Gram-Negative Rods and Cocci
690
22
HANNELE R. JOUSIMIES-SOMER
PAULA H. SUMMANEN
SYDNEY M. FINEGOLD
CURVED AND SPIRAL-SHAPED GRAM-NEGATIVE RODS
49 Algorithms for Identification of Curved and Spiral-Shaped Gram-Negative Rods
712
4
PATRICK R. MURRAY
50 Campylobacter and Arcobacter
716
11
IRVING NACHAMKIN
51 Helicobacter
727
12
JAMES VERSALOVIC
JAMES G. FOX
52 Leptospira and Leptonema
739
7
ROBBIN S. WEYANT
SANDRA L. BRAGG
ARNOLD F. KAUFMANN
53 Borrelia
746
13
TOM G. SCHWAN
WILLY BURGDORFER
PATRICIA A. ROSA
54 Treponema and Other Host-Associated Spirochetes
759
18
SANDRA A. LARSEN
STEVEN J. NORRIS
VICTORIA POPE
MYCOPLASMAS AND OBLIGATE INTRACELLULAR BACTERIA
55 Algorithms for Identification of Mycoplasmas, Ureaplasma, and Obligate Intracellular Bacteria
777
5
PATRICK R. MURRAY
56 Mycoplasma and Ureaplasma
782
13
KEN B. WAITES
DAVID TAYLOR-ROBINSON
57 Chlamydia
795
12
JULIUS SCHACHTER
WALTER E. STAMM
58 Rickettsia
807
8
DAVID H. WALKER
59 Coxiella
815
6
THOMAS J. MARRIE
DIDIER RAOULT
60 Ehrlichia
821
11
J. STEPHEN DUMLER
SECTION V VIROLOGY
832
327
ROBERT H. YOLKEN
DAVID A. LENNETTE
THOMAS F. SMITH
JOSEPH L. WANER
61 Taxonomy and Classification of Viruses
835
8
JOSEPH L. MELNICK
62 Algorithms for Detection and Identification of Viruses
843
4
ROBERT H. YOLKEN
DAVID A. LENNETTE
THOMAS F. SMITH
JOSEPH L. WANER
63 Human Immunodeficiency Viruses
847
24
JORG SCHUPBACH
64 Human T-Cell Lymphotropic Virus Types I and II
871
7
CHARLENE S. DEZZUTTI
RENU B. LAL
65 Herpes Simplex Viruses
878
10
ANN M. ARVIN
CHARLES G. PROBER
66 Human Cytomegalovirus
888
12
RICHARD L. HODINKA
67 Varicella-Zoster Virus
900
12
ANNE A. GERSHON
PHILIP LARUSSA
SHARON P. STEINBERG
68 Epstein-Barr Virus
912
7
EVELYNE T. LENNETTE
69 Human Herpesviruses 6, 7, and 8 and Herpes B Virus
919
9
JOHN A. STEWART
JOANNE L. PATTON
EVELYNE T. LENNETTE
70 Influenza Viruses
928
8
THEDI ZIEGLER
NANCY J. COX
71 Parainfluenza Viruses
936
6
JOSEPH L. WANER
72 Respiratory Syncytial Virus
942
9
DEBRA A. TRISTRAM
ROBERT C. WELLIVER
73 Measles Virus
951
8
AIMO A. SALMI
74 Mumps Virus
959
5
ELLA M. SWIERKOSZ
75 Rubella Virus
964
6
MAX A. CHERNESKY
JAMES B. MAHONY
76 Adenoviruses
970
13
GORAN WADELL
ANNIKA ALLARD
JOHN C. HIERHOLZER
77 Rhinoviruses
983
7
MARIE L. LANDRY
78 Enteroviruses
990
9
HARLEY A. ROTBART
79 Rotaviruses
999
6
MARY L. CHRISTENSEN
80 Caliciviruses, Astroviruses, and Other Diarrheic Viruses
1005
9
MARTIN PETRIC
81 Hepatitis A Virus
1014
11
JINHUA XIANG
JACK T. STAPLETON
82 Hepatitis B and D Viruses
1025
18
F. BLAINE HOLLINGER
JULES L. DIENSTAG
83 Hepatitis C and G Viruses
1043
10
JUDITH C. WILBER
84 Hepatitis E Virus
1053
17
JOHN R. TICEHURST
85 Human Papillomavirus
1070
10
NANCY B. KIVIAT
86 Polyomaviruses
1080
9
EUGENE O. MAJOR
87 Human Parvoviruses
1089
10
MARIALUISA ZERBINI
MONICA MUSIANI
88 Rabies Virus
1099
8
JEAN S. SMITH
89 Arboviruses
1107
18
THEODORE F. TSAI
90 Filoviruses and Arenaviruses
1125
12
PETER B. JAHRLING
91 Poxviruses Infecting Humans
1137
8
SUSAN L. ROPP
JOSEPH J. ESPOSITO
VLADIMIR N. LOPAREV
GREGORY J. PALUMBO
92 Transmissible Spongiform Encephalopathies
1145
14
DAVID M. ASHER
SECTION VI MYCOLOGY
1159
168
MICHAEL A. PFALLER
ROBERT A. FROMTLING
93 Taxonomy, Classification, and Morphology of the Fungi
1161
6
DENNIS M. DIXON
JUDITH C. RHODES
ROBERT A. FROMTLING
94 Algorithms for Detection and Identification of Fungi
1167
17
WILLIAM G. MERZ
GLENN D. ROBERTS
95 Candida, Cryptococcus, and Other Yeasts of Medical Importance
1184
16
NANCY G. WARREN
KEVIN C. HAZEN
96 Pneumocystis
1200
12
W. KEITH HADLEY
VALERIE L. NG
97 Aspergillus, Fusarium, and Other Opportunistic Moniliaceous Fungi
1212
30
LYNNE SIGLER
MICHAEL J. KENNEDY
98 Rhizopus, Rhizomucor, Absidia, and Other Agents of Systemic and Subcutaneous Zygomycoses
1242
17
MALCOLM D. RICHARDSON
GILLIAN S. SHANKLAND
99 Histoplasma, Blastomyces, Coccidioides, and Other Dimorphic Fungi Causing Systemic Mycoses
1259
16
DAVISE H. LARONE
THOMAS G. MITCHELL
THOMAS J. WALSH
100 Trichophyton, Microsporum, Epidermophyton, and Agents of Superficial Mycoses
1275
20
JULIUS KANE
RICHARD C. SUMMERBELL
101 Bipolaris, Exophiala, Scedosporium, Sporothrix, and Other Dematiaceous Fungi
1295
23
WILEY A. SCHELL
IRA F. SALKIN
LESTER PASARELL
MICHAEL R. McGINNIS
102 Fungi Causing Eumycotic Mycetoma
1318
9
ARVIND A. PADHYE
MICHAEL R. McGINNIS
SECTION VII PARASITOLOGY
1327
140
MICHAEL A. PFALLER
LYNNE S. GARCIA
103 Taxonomy and Classification of Human Parasites
1329
7
LYNNE S. GARCIA
DAVID A. BRUCKNER
104 Algorithms for Detection and Identification of Parasites
1336
19
LYNNE S. GARCIA
ROBYN Y. SHIMIZU
JOSEPHINE C. PALMER
105 Plasmodium and Babesia
1355
10
WILLIAM O. ROGERS
106 Leishmania and Trypanosoma
1365
9
DAVID A. BRUCKNER
JAIME A. LABARCA
107 Toxoplasma
1374
9
MARIANNA WILSON
JAMES B. McAULEY
108 Pathogenic and Opportunistic Free-Living Amebae
1383
8
GOVINDA S. VISVESVARA
109 Intestinal and Urogenital Amebae, Flagellates, and Ciliates
1391
15
AMY L. LEBER
SUSAN M. NOVAK
110 Cryptosporidium, Cyclospora, and Isospora
1406
7
YNES R. ORTEGA
111 Microsporidia
1413
8
RAINER WEBER
ELIZABETH U. CANNING
112 Intestinal Helminths
1421
15
LAWRENCE R. ASH
THOMAS C. ORIHEL
113 Tissue Helminths
1436
13
THOMAS C. ORIHEL
LAWRENCE R. ASH
114 Arthopods of Medical Importance
1449
18
THOMAS R. FRITSCHE
SECTION VIII ANTIMICROBIAL AGENTS AND SUSCEPTIBILITY TESTING
1467
196
FRED C. TENOVER
JAMES H. JORGENSEN
JOHN D. TURNIDGE
115 Antimicrobial Susceptibility Testing: General Considerations
1469
5
JOHN D. TURNIDGE
JAMES H. JORGENSEN
116 Antibacterial Agents
1474
31
JOSEPH D. C. YAO
ROBERT C. MOELLERING, JR.
117 Mechanisms of Resistance to Antimicrobial Agents
1505
21
RICHARD QUINTILIANI, JR.
DANIEL F. SAHM
PATRICE COURVALIN
118 Antibacterial Susceptibility Tests: Dilution and Disk Diffusion Methods
1526
18
JAMES H. JORGENSEN
JOHN D. TURNIDGE
JOHN A. WASHINGTON
119 Susceptibility Testing of Fastidious Bacteria
1544
11
JANET A. HINDLER
JANA M. SWENSON
120 Susceptibility Testing of Anaerobic Bacteria
1555
8
DAVID W. HECHT
121 Special Phenotypic Methods for Detecting Antibacterial Resistance
1563
15
JANA M. SWENSON
JANET A. HINDLER
LANCE R. PETERSON
122 Genetic Methods for Detecting Antibacterial and Antiviral Resistance Genes
1578
15
FRED C. TENOVER
J. KAMILE RASHEED
123 Susceptibility Testing Instrumentation and Computerized Expert Systems for Data Analysis and Interpretation
1593
8
MARY JANE FERRARO
JAMES H. JORGENSEN
124 Antimycobacterial Agents and Susceptibility Tests
1601
23
CLARK B. INDERLIED
MAX SALFINGER
125 Antiviral Agents and Susceptibility Tests
1624
16
ELLA M. SWIERKOSZ
RICHARD L. HODINKA
126 Antifungal Agents and Susceptibility Tests
1640
13
ANA ESPINEL-INGROFF
THEODORE WHITE
MICHAEL A. PFALLER
127 Antiparasitic Agents and Susceptibility Tests
1653
10
PHUC NGUYEN-DINH
W. EVAN SECOR
SECTION IX REAGENTS, STAINS, AND MEDIA
1663
46
PATRICK R. MURRAY
KIMBERLE C. CHAPIN
128 Reagents
1665
9
TSAI-LING LAUDERDALE
KIMBERLE C. CHAPIN
PATRICK R. MURRAY
129 Stains
1674
13
KIMBERLE C. CHAPIN
PATRICK R. MURRAY
130 Media
1687
22
KIMBERLE C. CHAPIN
PATRICK R. MURRAY
Author Index
1709
2
Subject Index
1711