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Tables of Contents for Gene Regulation and Metabolism
Chapter/Section Title
Page #
Page Count
Preface
vii
Are the Eyes Homologous?
1
16
Jeremy C. Ahouse
I Information and Knowledge Representation
17
68
Automation of Protein Sequence Characterization and Its Application in Whole Proteome Analysis
19
30
Rolf Apweiler
Margaret Biswas
Wolfgang Fleischmann
Evgenia V. Kriventseva
Nicola Mulder
Information Fusion and Metabolic Network Control
49
36
Andreas Freier
Ralf Hofestadt
Matthias Lange
Uwe Scholz
II Gene Regulation: From Sequence to Networks
85
136
Specificity of Protein-DNA Interactions
87
16
Gary D. Stormo
Genomics of Gene Regulation: The View
103
26
Escherichia coli
Julio Collado-Vides
Gabriel Moreno-Hagelsieb
Ernesto Perez-Rueda
Heladia Salgado
Araceli M. Huerta
Rosa Maria Gutierrez
David A. Rosenblueth
Andres Christen
Esperanza Benitez-Bellon
Arturo Medrano-Soto
Socorro Gama-Castro
Alberto Santos-Zavaleta
Cesar Bonavides-Martinez
Edgar Diaz-Peredo
Fabiola Sanchez-Solano
Dulce Maria Millan
Discovery of DNA Regulatory Motifs
129
20
Abigail Manson McGuire
George M. Church
Gene Networks Description and Modeling in the GeneNet System
149
32
Nikolay A. Kolchanov
Elena A. Ananko
Vitali A. Likhoshvai
Olga A. Podkolodnaya
Elena V. Ignatieva
Alexander V. Ratushny
Yuri G. Matushkin
Regulation of Cellular States in Mammalian Cells from a Genomewide View
181
40
Sui Huang
III Postgenomic Approaches
221
68
Predicting Protein Function and Networks on a Genomewide Scale
223
28
Edward M. Marcotte
Metabolic Pathways
251
22
Steffen Schmidt
Thomas Dandekar
Toward Computer Simulation of the Whole Cell
273
16
Masaru Tomita
Glossary
289
8
Corresponding Authors
297
2
Index
299