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Tables of Contents for Computational and Statistical Approaches to Genomics
Chapter/Section Title
Page #
Page Count
Foreword
ix
Preface
xi
Microarray Image Analysis and Gene Expression Ratio Statistics
Yidong Chen Edward R. Dougherty Michael L. Bittner Paul Meltzer Jeffery Trent
1
22
Statistical Considerations in the Assessment of cDNA Microarray Data Obtained Using Amplification
Jing Wang Kevin R. Coombes Keith Baggerly Limei Hu Stanley R. Hamilton Wei Zhang
23
18
Sources of Variation in Microarray Experiments
M. Kathleen Kerr Edward H. Leiter Laurent Picard Gary A. Churchill
41
12
Studentizing Microarray Data
Keith A. Baggerly Kevin R. Coombes Kenneth R. Hess David N. Stivers Lynne V. Abruzzo Wei Zhang
53
12
Exploratory Clustering of Gene Expression Profiles of Mutated Yeast Strains
Merja Oja Janne Nikkila Petri Toronen Garry Wong Eero Castren Samuel Kaski
65
14
Selecting Informative Genes for Cancer Classification Using Gene Expression Data
Tatsuya Akutsu Satoru Miyano
79
14
Design Issues and Comparison of Methods for Microarray-Based Classification
Edward R. Dougherty Sanju N. Attoor
93
20
Analyzing Protein Sequences using Signal Analysis Techniques
Karen M. Bloch Gonzalo R. Arce
113
12
Statistics of the Numbers of Transcripts and Protein Sequences Encoded in the Genome
Vladimir A. Kuznetsov
125
48
Normalized Maximum Likelihood Models for Boolean Regression Used for Prediction and Classification in Genomics
Ioan Tabus Jorma Rissanen Jaakko Astola
173
24
Inference of Genetic Regulatory Networks via Best-Fit Extensions
Ilya Shmulevich Antti Saarinen Olli Yli-Harja Jaakko Astola
197
14
Regularization and Noise Injection for Improving Genetic Network Models
Eugene van Someren Lodewyk Wessels Marcel Reinders Eric Backer
211
16
Parallel Computation and Visualization Tools for Codetermination Analysis of Multivariate Gene-Expression Relations
Edward B. Suh Edward R. Dougherty Seungchan Kim Michael L. Bittner Yidong Chen Daniel E. Russ Robert L. Martino
227
14
Human Glimo Diagnosis from Gene Expression Data
Gregory N. Fuller Kenneth R. Hess Cristian Mircean Ioan Tabus Ilya Shmulevich Chang Hun Rhee Kenneth D. Aldape Janet M. Bruner Raymond A. Sawaya Wei Zhang
241
16
Application of DNA Microarray Technology to Clinical Biopsies of Breast Cancer
Lajos Pusztai W. Fraser Symmans Thomas A. Buchholz Jim Stec Mark Ayers Ed Clark Funda Meric David Stivers Kenneth Hess
257
20
Alternative Splicing: Genetic Complexity in Cancer
Sonya W. Song Gilbert J. Cote Chunlei Wu Wei Zhang
277
22
Single-Nucleotide Polymorphisms, DNA Repair, and Cancer
Qingyi Wei Erich M. Sturgis Margaret R. Spitz Harvey W. Mohrenweiser Ilya Shmulevich Shouming Kong David Cogdell Qing Mi Wei Zhang
299
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